SE and TC

If there is both a comma and a yet in a sentence, do we view this as a support or contrast when solving the sentence?

Can you show us an example?

Generally, the comma and the yet would be blocked together as a contrast.

For example:

You can’t deny he’s made good progress, yet there are some major challenges he needs to overcome.

You can’t deny he’s made good progress [, yet (-)] there are some major challenges he needs to overcome.

Or, if you wanna be purely mathematical, you can put the “yet” with the right hand side:

[You can’t deny he’s made good progress] [, (=)] [ [yet (-)] there are some major challenges he needs to overcome.]

Either way it’s a contrast here.